manuscript-code

Code and data for the paper “An analysis of the cloud environment over the Ross Sea and Ross Ice Shelf using CloudSat/CALIPSO satellites: The importance of Synoptic” by Jolly et al. (2018)

More detailed growth models using inference.

Code for the paper “Climate model code genealogy and its relation to climate feedbacks and sensitivity” by Kuma et al. (2023)

Code and data for the paper “Direct radiative effects of airborne microplastics” by Revell et al. (2021)

Dissecting systems serology with a tensor factorization

Study Fc antibody dynamics using a multivalent binding model

A binding-reaction model for the common gamma chain receptor cytokines.

A Multivalent Binding Model for FcgRs

This is to show oscillations in the number of cells in G1 and in G2 phase of cell cycle.

Code for the paper “Machine learning of cloud types in satellite observations and climate models” by Kuma et al. (2023)

The structure is the message: preserving experimental context through tensor decomposition

一个出图+组图skill，附带一整套svg工具

Clusters phosphoproteomics data by sequence and abundance dynamics

Trafficking model of FcRn to explain the effects of failed release at the cell surface.

Reproducible analysis for between-visit cerebrovascular and cardiovascular responses during the cold pressor test

R code for “Hierarchical Bayesian modeling of heterogeneous outcome variance in cluster randomized trials” by Guangyu Tong, Jiaqi Tong, Yi Jiang, Denise Esserman, Michael O. Harhay, and Joshua L. Warren. Clinical Trials (2024), 21(4):451–460.

Inferring antibody species from systems serology with a mechanistic binding model.

A modeling perspective on cell selective ligands

R package for “Semiparametric Principal Stratification Analysis Beyond Monotonicity” by Jiaqi Tong, Brennan Kahan, Michael O. Harhay, and Fan Li. Statistica Sinica, in press.