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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 277

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 512 117

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 412 73

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 432 78

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 366 53

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 216 16

Repositories

Showing 10 of 276 repositories
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy's past year of commit activity
    Python 366 Apache-2.0 53 15 4 Updated Oct 8, 2026
  • LabCompass-reproducibility Public

    Repository for the collaboration with Goettgens Lab on Spectral Flow Cytometry (SFC) data.

    theislab/LabCompass-reproducibility's past year of commit activity
    Jupyter Notebook 1 BSD-2-Clause 0 0 1 Updated Oct 8, 2026
  • spatialdata-db-client Public
    theislab/spatialdata-db-client's past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Oct 8, 2026
  • ReconEval Public

    Benchmarking for gene expression from single cell latent representations

    theislab/ReconEval's past year of commit activity
    Jupyter Notebook 21 MIT 3 1 0 Updated Oct 7, 2026
  • ehrapy-tutorials Public

    Tutorials for ehrapy

    theislab/ehrapy-tutorials's past year of commit activity
    Jupyter Notebook 9 Apache-2.0 2 0 0 Updated Oct 7, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Oct 7, 2026
  • scfit Public
    theislab/scfit's past year of commit activity
    Python 2 MIT 0 1 2 Updated Oct 7, 2026
  • donordata Public

    Single-cell experiments measure cells but are designed around donors: patients, samples, guides, compounds. DonorData keeps these levels together in one object and aligned under every operation.

    theislab/donordata's past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Oct 6, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink's past year of commit activity
    Python 21 Apache-2.0 6 5 4 Updated Oct 6, 2026
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices's past year of commit activity
    Jupyter Notebook 1,281 277 4 1 Updated Oct 6, 2026
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