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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 521 repositories
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Oct 8, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 2 MIT 0 68 2 Updated Oct 7, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 55 14 Updated Oct 8, 2026
  • microns_tutorial Public

    MICrONS databook and analysis tutorials

    AllenInstitute/microns_tutorial's past year of commit activity
    HTML 12 4 1 0 Updated Oct 8, 2026
  • AutoPumping Public

    A Python package for automating high-vacuum pumping systems.

    AllenInstitute/AutoPumping's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 7, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 288 6 Updated Oct 8, 2026
  • AllenInstitute/Allen_Brain_Map_Resource_Finder's past year of commit activity
    HTML 0 0 0 0 Updated Oct 7, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis's past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Oct 8, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access's past year of commit activity
    Jupyter Notebook 125 41 21 6 Updated Oct 7, 2026
  • atlas-assets-viewer Public

    Static single-file viewer and validator for S3 buckets laid out per the atlas-assets spec

    AllenInstitute/atlas-assets-viewer's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Oct 8, 2026